16 #ifndef dealii_trilinos_vector_h
17 #define dealii_trilinos_vector_h
22 #ifdef DEAL_II_WITH_TRILINOS
33 # include <Epetra_ConfigDefs.h>
34 # include <Epetra_FEVector.h>
35 # include <Epetra_LocalMap.h>
36 # include <Epetra_Map.h>
37 # include <Epetra_MpiComm.h>
50 template <
typename Number>
51 class ReadWriteVector;
108 VectorReference(
const VectorReference &) =
default;
121 const VectorReference &
122 operator=(
const VectorReference &r)
const;
128 operator=(
const VectorReference &r);
133 const VectorReference &
139 const VectorReference &
145 const VectorReference &
151 const VectorReference &
157 const VectorReference &
171 <<
"An error with error number " << arg1
172 <<
" occurred while calling a Trilinos function");
194 # ifndef DEAL_II_WITH_64BIT_INDICES
199 gid(
const Epetra_BlockMap &map,
int i)
208 gid(
const Epetra_BlockMap &map,
int i)
448 const MPI_Comm &communicator = MPI_COMM_WORLD);
463 const MPI_Comm &communicator = MPI_COMM_WORLD);
481 const MPI_Comm &communicator = MPI_COMM_WORLD);
495 template <
typename Number>
497 const ::Vector<Number> &v,
498 const MPI_Comm & communicator = MPI_COMM_WORLD);
543 const bool omit_zeroing_entries =
false,
544 const bool allow_different_maps =
false);
570 const MPI_Comm &communicator = MPI_COMM_WORLD,
571 const bool omit_zeroing_entries =
false);
601 const MPI_Comm &communicator = MPI_COMM_WORLD,
602 const bool vector_writable =
false);
610 const std::shared_ptr<const Utilities::MPI::Partitioner> &partitioner,
611 const bool vector_writable =
false);
675 template <
typename Number>
779 std::pair<size_type, size_type>
982 std::vector<TrilinosScalar> &
values)
const;
1011 template <
typename ForwardIterator,
typename OutputIterator>
1014 const ForwardIterator indices_end,
1015 OutputIterator values_begin)
const;
1066 set(
const std::vector<size_type> & indices,
1067 const std::vector<TrilinosScalar> &
values);
1074 set(
const std::vector<size_type> & indices,
1075 const ::Vector<TrilinosScalar> &
values);
1092 add(
const std::vector<size_type> & indices,
1093 const std::vector<TrilinosScalar> &
values);
1100 add(
const std::vector<size_type> & indices,
1101 const ::Vector<TrilinosScalar> &
values);
1157 add(
const Vector &
V,
const bool allow_different_maps =
false);
1211 const Epetra_MultiVector &
1225 const Epetra_BlockMap &
1236 print(std::ostream & out,
1237 const unsigned int precision = 3,
1238 const bool scientific =
true,
1239 const bool across =
true)
const;
1281 <<
"An error with error number " << arg1
1282 <<
" occurred while calling a Trilinos function");
1293 <<
"You are trying to access element " << arg1
1294 <<
" of a distributed vector, but this element is not stored "
1295 <<
"on the current processor. Note: There are " << arg2
1296 <<
" elements stored "
1297 <<
"on the current processor from within the range [" << arg3 <<
','
1298 << arg4 <<
"] but Trilinos vectors need not store contiguous "
1299 <<
"ranges on each processor, and not every element in "
1300 <<
"this range may in fact be stored locally."
1302 <<
"A common source for this kind of problem is that you "
1303 <<
"are passing a 'fully distributed' vector into a function "
1304 <<
"that needs read access to vector elements that correspond "
1305 <<
"to degrees of freedom on ghost cells (or at least to "
1306 <<
"'locally active' degrees of freedom that are not also "
1307 <<
"'locally owned'). You need to pass a vector that has these "
1308 <<
"elements as ghost entries.");
1382 inline VectorReference::VectorReference(
MPI::Vector & vector,
1389 inline const VectorReference &
1390 VectorReference::operator=(
const VectorReference &r)
const
1403 inline VectorReference &
1404 VectorReference::operator=(
const VectorReference &r)
1413 inline const VectorReference &
1416 vector.set(1, &index, &value);
1422 inline const VectorReference &
1425 vector.add(1, &index, &value);
1431 inline const VectorReference &
1435 vector.add(1, &index, &new_value);
1441 inline const VectorReference &
1445 vector.set(1, &index, &new_value);
1451 inline const VectorReference &
1455 vector.set(1, &index, &new_value);
1465 std::pair<size_type, size_type> range =
local_range();
1467 return ((index >= range.first) && (index < range.second));
1477 "The locally owned elements have not been properly initialized!"
1478 " This happens for example if this object has been initialized"
1479 " with exactly one overlapping IndexSet."));
1499 inline internal::VectorReference
1507 inline internal::VectorReference
1525 std::vector<TrilinosScalar> &
values)
const
1527 for (
size_type i = 0; i < indices.size(); ++i)
1528 values[i] =
operator()(indices[i]);
1533 template <
typename ForwardIterator,
typename OutputIterator>
1536 const ForwardIterator indices_end,
1537 OutputIterator values_begin)
const
1539 while (indices_begin != indices_end)
1582 Vector::set(
const std::vector<size_type> & indices,
1583 const std::vector<TrilinosScalar> &
values)
1591 set(indices.size(), indices.data(),
values.data());
1597 Vector::set(
const std::vector<size_type> & indices,
1598 const ::Vector<TrilinosScalar> &
values)
1606 set(indices.size(), indices.data(),
values.begin());
1622 const int ierr =
vector->GlobalAssemble(Add);
1629 for (
size_type i = 0; i < n_elements; ++i)
1634 if (local_row != -1)
1635 (*vector)[0][local_row] =
values[i];
1638 const int ierr =
vector->ReplaceGlobalValues(1, &row, &
values[i]);
1653 Vector::add(
const std::vector<size_type> & indices,
1654 const std::vector<TrilinosScalar> &
values)
1661 add(indices.size(), indices.data(),
values.data());
1667 Vector::add(
const std::vector<size_type> & indices,
1668 const ::Vector<TrilinosScalar> &
values)
1675 add(indices.size(), indices.data(),
values.begin());
1693 const int ierr =
vector->GlobalAssemble(Insert);
1699 for (
size_type i = 0; i < n_elements; ++i)
1704 if (local_row != -1)
1705 (*vector)[0][local_row] +=
values[i];
1708 const int ierr =
vector->SumIntoGlobalValues(
1725 "Attempted to write into off-processor vector entry "
1726 "that has not be specified as being writable upon "
1728 (*nonlocal_vector)[0][my_row] +=
values[i];
1739 # ifndef DEAL_II_WITH_64BIT_INDICES
1740 return vector->Map().MaxAllGID() + 1 -
vector->Map().MinAllGID();
1742 return vector->Map().MaxAllGID64() + 1 -
vector->Map().MinAllGID64();
1751 return vector->Map().NumMyElements();
1764 inline std::pair<Vector::size_type, Vector::size_type>
1767 # ifndef DEAL_II_WITH_64BIT_INDICES
1770 vector->Map().MaxMyGID() + 1;
1773 vector->Map().MinMyGID64();
1775 vector->Map().MaxMyGID64() + 1;
1781 "This function only makes sense if the elements that this "
1782 "vector stores on the current processor form a contiguous range. "
1783 "This does not appear to be the case for the current vector."));
1799 const int ierr =
vector->Dot(*(vec.vector), &result);
1834 const int ierr =
vector->MinValue(&min_value);
1846 const int ierr =
vector->MaxValue(&max_value);
1860 const int ierr =
vector->Norm1(&
d);
1874 const int ierr =
vector->Norm2(&
d);
1912 const int ierr =
vector->NormInf(&
d);
1941 const int ierr =
vector->Scale(a);
1958 const int ierr =
vector->Scale(factor);
1973 const int ierr =
vector->Update(1.0, *(v.vector), 1.0);
1988 const int ierr =
vector->Update(-1.0, *(v.vector), 1.0);
2021 const int ierr =
vector->Update(a, *(v.vector), 1.);
2042 const int ierr =
vector->Update(a, *(v.vector),
b, *(
w.vector), 1.);
2064 Assert(this->
vector->Map().SameAs(v.vector->Map()) ==
true,
2066 const int ierr =
vector->Update(1., *(v.vector), s);
2095 Assert(this->
vector->Map().SameAs(v.vector->Map()) ==
true,
2097 const int ierr =
vector->Update(a, *(v.vector), s);
2105 this->
add(tmp,
true);
2119 const int ierr =
vector->Multiply(1.0, *(factors.vector), *
vector, 0.0);
2134 if (
vector->Map().SameAs(v.vector->Map()) ==
false)
2136 this->
sadd(0., a, v);
2141 int ierr =
vector->Update(a, *v.vector, 0.0);
2150 inline const Epetra_MultiVector &
2153 return static_cast<const Epetra_MultiVector &
>(*vector);
2158 inline Epetra_FEVector &
2166 inline const Epetra_BlockMap &
2174 inline const MPI_Comm &
2177 static MPI_Comm
comm;
2179 const Epetra_MpiComm *mpi_comm =
2180 dynamic_cast<const Epetra_MpiComm *
>(&
vector->Map().Comm());
2181 comm = mpi_comm->Comm();
2186 template <
typename number>
2188 const ::Vector<number> &v,
2189 const MPI_Comm & communicator)
2203 int ierr =
vector->PutScalar(s);
2225 namespace LinearOperatorImplementation
2238 template <
typename Matrix>
2242 bool omit_zeroing_entries)
2245 matrix.get_mpi_communicator(),
2246 omit_zeroing_entries);
2249 template <
typename Matrix>
2253 bool omit_zeroing_entries)
2256 matrix.get_mpi_communicator(),
2257 omit_zeroing_entries);
size_type n_elements() const
Epetra_Map make_trilinos_map(const MPI_Comm &communicator=MPI_COMM_WORLD, const bool overlapping=false) const
real_type l1_norm() const
void sadd(const TrilinosScalar s, const Vector &V)
TrilinosScalar mean_value() const
void add(const size_type n_elements, const size_type *indices, const TrilinosScalar *values)
const Epetra_BlockMap & trilinos_partitioner() const
void add(const std::vector< size_type > &indices, const std::vector< TrilinosScalar > &values)
const MPI_Comm & get_mpi_communicator() const
std::unique_ptr< Epetra_MultiVector > nonlocal_vector
Epetra_FEVector & trilinos_vector()
void add(const TrilinosScalar s)
void update_ghost_values() const
reference operator()(const size_type index)
void import_nonlocal_data_for_fe(const ::TrilinosWrappers::SparseMatrix &matrix, const Vector &vector)
std::unique_ptr< Epetra_FEVector > vector
bool in_local_range(const size_type index) const
size_type local_size() const
void print(std::ostream &out, const unsigned int precision=3, const bool scientific=true, const bool across=true) const
friend class internal::VectorReference
real_type lp_norm(const TrilinosScalar p) const
IndexSet locally_owned_elements() const
real_type l2_norm() const
const internal::VectorReference const_reference
void reinit(const Vector &v, const bool omit_zeroing_entries=false, const bool allow_different_maps=false)
Vector & operator+=(const Vector &V)
bool has_ghost_elements() const
void compress(::VectorOperation::values operation)
real_type norm_sqr() const
void extract_subvector_to(const std::vector< size_type > &indices, std::vector< TrilinosScalar > &values) const
bool operator!=(const Vector &v) const
~Vector() override=default
const_iterator begin() const
real_type linfty_norm() const
internal::VectorReference reference
TrilinosScalar min() const
void set(const std::vector< size_type > &indices, const ::Vector< TrilinosScalar > &values)
void set(const size_type n_elements, const size_type *indices, const TrilinosScalar *values)
void scale(const Vector &scaling_factors)
void equ(const TrilinosScalar a, const Vector &V)
const Epetra_MultiVector & trilinos_vector() const
bool operator==(const Vector &v) const
Vector & operator/=(const TrilinosScalar factor)
void sadd(const TrilinosScalar s, const TrilinosScalar a, const Vector &V)
Epetra_CombineMode last_action
reference operator[](const size_type index)
size_type locally_owned_size() const
std::pair< size_type, size_type > local_range() const
TrilinosScalar operator[](const size_type index) const
Vector & operator*=(const TrilinosScalar factor)
Vector & operator=(const TrilinosScalar s)
Vector & operator=(const ::Vector< Number > &v)
TrilinosScalar add_and_dot(const TrilinosScalar a, const Vector &V, const Vector &W)
bool is_non_negative() const
::types::global_dof_index size_type
TrilinosScalar operator*(const Vector &vec) const
void add(const std::vector< size_type > &indices, const ::Vector< TrilinosScalar > &values)
Vector & operator-=(const Vector &V)
void extract_subvector_to(ForwardIterator indices_begin, const ForwardIterator indices_end, OutputIterator values_begin) const
std::size_t memory_consumption() const
Vector(const IndexSet ¶llel_partitioning, const ::Vector< Number > &v, const MPI_Comm &communicator=MPI_COMM_WORLD)
void add(const TrilinosScalar a, const Vector &V, const TrilinosScalar b, const Vector &W)
void add(const TrilinosScalar a, const Vector &V)
void set(const std::vector< size_type > &indices, const std::vector< TrilinosScalar > &values)
void swap(Vector &u, Vector &v)
TrilinosScalar max() const
const_iterator end() const
typename numbers::NumberTraits< Number >::real_type real_type
bool has_ghost_elements() const
const value_type * const_iterator
types::global_dof_index size_type
size_type locally_owned_size() const
static void reinit_domain_vector(const Matrix &matrix, TrilinosWrappers::MPI::Vector &v, bool omit_zeroing_entries)
static void reinit_range_vector(const Matrix &matrix, TrilinosWrappers::MPI::Vector &v, bool omit_zeroing_entries)
#define DEAL_II_DEPRECATED
#define DEAL_II_NAMESPACE_OPEN
#define DEAL_II_NAMESPACE_CLOSE
#define DeclException0(Exception0)
static ::ExceptionBase & ExcTrilinosError(int arg1)
static ::ExceptionBase & ExcTrilinosError(int arg1)
#define DeclException4(Exception4, type1, type2, type3, type4, outsequence)
#define Assert(cond, exc)
#define AssertIsFinite(number)
#define AssertDimension(dim1, dim2)
static ::ExceptionBase & ExcDifferentParallelPartitioning()
#define DeclException1(Exception1, type1, outsequence)
static ::ExceptionBase & ExcGhostsPresent()
static ::ExceptionBase & ExcMessage(std::string arg1)
static ::ExceptionBase & ExcAccessToNonLocalElement(size_type arg1, size_type arg2, size_type arg3, size_type arg4)
#define AssertThrow(cond, exc)
Expression fabs(const Expression &x)
@ matrix
Contents is actually a matrix.
SparseMatrix< double > SparseMatrix
types::global_dof_index size_type
double norm(const FEValuesBase< dim > &fe, const ArrayView< const std::vector< Tensor< 1, dim >>> &Du)
SymmetricTensor< 2, dim, Number > d(const Tensor< 2, dim, Number > &F, const Tensor< 2, dim, Number > &dF_dt)
Tensor< 2, dim, Number > w(const Tensor< 2, dim, Number > &F, const Tensor< 2, dim, Number > &dF_dt)
SymmetricTensor< 2, dim, Number > b(const Tensor< 2, dim, Number > &F)
int gid(const Epetra_BlockMap &map, int i)
T sum(const T &t, const MPI_Comm &mpi_communicator)
unsigned int global_dof_index
::VectorizedArray< Number, width > pow(const ::VectorizedArray< Number, width > &, const Number p)